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This page contains a full list of Camino commands with links to HTML versions of each ones man page. The pages may be viewed locally from a terminal by typing

adcfit - Fits the apparent diffusion coefficient to diffusion MRI

addnoise - Adds noise to diffusion MRI measurements.

analyze2voxel - Converts scanner-order data in Analyze format to voxel-order data.

analyzedti - Takes Analyze format raw data and outputs DT data in Analyze format

analyzeheader - Create or read an Analyze 7.5 header file.

axialdistfit - Fits an axial PDF to sets of axes.

ballstickfit - Fits a partial volume model to diffusion MRI measurements.

byte2txt - Converts binary byte data to text.

camino - Overview of the Camino diffusion MR reconstuction toolkit

char2txt - Converts binary char data to text.

combinetwofibreluts - Combine two fibre LUTs with a range of

consfrac - Computes the consistency fraction for multiple fibre reconstructions.

countseeds - Counts seed voxels within an image.

cpstats - Does statistics on PICo maps.

datastats - Computes simple statistics of each diffusion weighted measurement within a region of interest.

datasynth - Generates synthetic diffusion MRI data.

double2txt - Converts big-endian binary double data to text.

dt2nii - Converts Camino tensors to nii files.

dteig - Computes the eigensystem of tensors.

dtfit - Fits the diffusion tensor to diffusion MRI measurements.

dtlutgen - Generates a PICo lookup table (LUT) or tables.

dtmx - Creates a linear transform for fitting the diffusion tensor.

dtpdview - Visualizes principal directions of diffusion tensors

dtshape - Computes DT shape statistics.

estimatesnr - Estimates the signal to noise ratio in b=0 images.

fa - Computes the fractional anisotropy of tensors.

fanninggrid FanningGrid \- Creates a voxel grid simulating fanning structure.

float2txt - Converts big-endian binary float data to text.

fsl2scheme - converts b-vectors and b-values from FSL format to a Camino scheme file.

image2voxel - Converts scanner-order data in a supported image format to voxel-order data.

int2txt - Converts big-endian binary integer data to text.

invstats - Computes statistics of populations of diffusion tensors.

linrecon - Runs a linear transformation in each voxel.

long2txt - Converts big-endian binary long integer data to text.

mask - Creates a background mask from a voxel-ordered DW data file by

maxcp - Computes the maximum connection probabilty over a region of interest.

mbalign - Aligns the diffusion-weighted images within a single acquisition.

md - Computes the mean diffusivity (trace/3) from diffusion tensors.

meancp - Computes the mean connection probability over an ROI

mediancp - Computes the median connection probability over an ROI

mesd - Maximum entropy spherical deconvolution.

metadt2camino - Converts MetaIO tensors to Camino.

mfrstats - Computes statistics of populations of multiple fibre directions.

mincp - Computes the minimum connection probability over and ROI

modelfit - Fits models of the spin-displacement density to diffusion MRI measurements.

multitenfit - Fits one or more diffusion tensors to the data in each voxel according to a voxel classification map to specify the number of

niftidt2camino - Converts NIFTI-1 tensors to Camino.

niftiheader - Read a NIFTI-1 header and print the header attributes.

orderpoints - Order points such that a partial scan has evenly spaced gradient directions

pdview - Visualizes principal direction(s) in each voxel

picocalibdata - Creates synthetic data for PICo calibration

picopdfs - Gets the parameters of a PICo PDF for an image.

pointset2scheme - Creates scheme files from point sets.

procstreamlines - Process streamline data

qballmx - Creates a reconstruction matrix for Q-Ball

reorient - Reorients diffusion tensors for consistency with an image transformation.

restore - Fits the diffusion tensor to diffusion MRI measurements robustly using the RESTORE algorithm by Chang et al MRM 53 2005.

rgbscalarimg - Create an RGB image from diffusion peak directions, modulated by a scalar image (eg, anisotropy).

scanner2voxel - Converts scanner-order data to voxel-order data.

scheme2fsl - Reads a Camino V0 scheme file and writes FSL bvecs and bvals files.

sfanis - Computes an index of anisotropy of spherical functions.

sfkurtosis - Computes an index of kurtosis of spherical functions.

sflutgen - Generates PICo lookup tables (LUT) for multi-fibre methods such as PASMRI and Q-Ball.

sfpeaks - Finds the peaks of spherical functions.

sfpicocalibdata - Generates Spherical Function PICo Calibration Data

sfplot - Plots the output of various diffusion MRI reconstruction algorithms over slices through data sets.

sfskewness - Computes an index of skewness of spherical functions.

shfit - Fits the spherical harmonic series to the log measurements.

shformatconverter - Converts spherical harmonics from third party programs into the format used by camino.

short2txt - Converts big-endian binary short integer data to text.

shredder - Extracts periodic chunks from a data stream.

split4dnii - Converts 4D or 5D NIFTI-1 files to 3D volumes.

subsetpoints - Order points into subsets such that each subset has evenly spaced gradient directions

subsetscheme - Create scheme files from a subset of directions in an existing scheme

targetprobs2txt - Converts results of connectivity based segmentation to a text file.

template function_name \- One sentence to describe the usage of the function.

threetenfit - Fits three diffusion tensors to diffusion MRI measurements.

track - Performs streamline tractography.

tractshredder shredder \- Extracts bunches of streamlines.

tractstatimage - Computes images based on statistics from streamline tracts.

tractstats - Computes statistics from streamline tracts.

trd - Computes the trace of tensors.

twotenfit - Fits two diffusion tensors to diffusion MRI measurements.

vcthreshselect - Visualizes F-test data from voxelclassify(1).

voxel2scanner - Converts voxel-order data to scanner-order data.

voxelclassify - Classifies voxels according to the lowest-order spherical

voxelmean - calculates the mean of each diffusion MRI measurement in a set of voxels.

vtkstreamlines - Convert streamlines to VTK

wdtfit - Fits the diffusion tensor to diffusion MRI measurements.